Thursday, 19 May 2022

Sqoop: --delete-target-dir: Overwrite HDFS target directory

--delete-target-dir option overwrite the content of target directory.

 

Let me explain it with an example.

sqoop import \
--connect "jdbc:mysql://quickstart.cloudera:3306/retail_db" \
--username "root" \
--password "cloudera" \
--table "customers" \
--target-dir /overwrite_demo

  Let’s execute above command to copy the customers table to the directory /overwrite_demo.

 

[cloudera@quickstart ~]$ sqoop import \
> --connect "jdbc:mysql://quickstart.cloudera:3306/retail_db" \
> --username "root" \
> --password "cloudera" \
> --table "customers" \
> --target-dir /overwrite_demo
Warning: /usr/lib/sqoop/../accumulo does not exist! Accumulo imports will fail.
Please set $ACCUMULO_HOME to the root of your Accumulo installation.
22/04/03 09:28:30 INFO sqoop.Sqoop: Running Sqoop version: 1.4.6-cdh5.13.0
22/04/03 09:28:30 WARN tool.BaseSqoopTool: Setting your password on the command-line is insecure. Consider using -P instead.
22/04/03 09:28:30 INFO manager.MySQLManager: Preparing to use a MySQL streaming resultset.
22/04/03 09:28:30 INFO tool.CodeGenTool: Beginning code generation
22/04/03 09:28:31 INFO manager.SqlManager: Executing SQL statement: SELECT t.* FROM `customers` AS t LIMIT 1
22/04/03 09:28:31 INFO manager.SqlManager: Executing SQL statement: SELECT t.* FROM `customers` AS t LIMIT 1
22/04/03 09:28:31 INFO orm.CompilationManager: HADOOP_MAPRED_HOME is /usr/lib/hadoop-mapreduce
Note: /tmp/sqoop-cloudera/compile/8f2c1d9b456acc2c526255b25262285e/customers.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
22/04/03 09:28:34 INFO orm.CompilationManager: Writing jar file: /tmp/sqoop-cloudera/compile/8f2c1d9b456acc2c526255b25262285e/customers.jar
22/04/03 09:28:34 WARN manager.MySQLManager: It looks like you are importing from mysql.
22/04/03 09:28:34 WARN manager.MySQLManager: This transfer can be faster! Use the --direct
22/04/03 09:28:34 WARN manager.MySQLManager: option to exercise a MySQL-specific fast path.
22/04/03 09:28:34 INFO manager.MySQLManager: Setting zero DATETIME behavior to convertToNull (mysql)
22/04/03 09:28:34 INFO mapreduce.ImportJobBase: Beginning import of customers
22/04/03 09:28:34 INFO Configuration.deprecation: mapred.job.tracker is deprecated. Instead, use mapreduce.jobtracker.address
22/04/03 09:28:34 INFO Configuration.deprecation: mapred.jar is deprecated. Instead, use mapreduce.job.jar
22/04/03 09:28:35 INFO Configuration.deprecation: mapred.map.tasks is deprecated. Instead, use mapreduce.job.maps
22/04/03 09:28:35 INFO client.RMProxy: Connecting to ResourceManager at /0.0.0.0:8032
22/04/03 09:28:38 WARN hdfs.DFSClient: Caught exception 
java.lang.InterruptedException
	at java.lang.Object.wait(Native Method)
	at java.lang.Thread.join(Thread.java:1281)
	at java.lang.Thread.join(Thread.java:1355)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.closeResponder(DFSOutputStream.java:967)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.endBlock(DFSOutputStream.java:705)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:894)
22/04/03 09:28:38 WARN hdfs.DFSClient: Caught exception 
java.lang.InterruptedException
	at java.lang.Object.wait(Native Method)
	at java.lang.Thread.join(Thread.java:1281)
	at java.lang.Thread.join(Thread.java:1355)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.closeResponder(DFSOutputStream.java:967)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.endBlock(DFSOutputStream.java:705)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:894)
22/04/03 09:28:38 WARN hdfs.DFSClient: Caught exception 
java.lang.InterruptedException
	at java.lang.Object.wait(Native Method)
	at java.lang.Thread.join(Thread.java:1281)
	at java.lang.Thread.join(Thread.java:1355)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.closeResponder(DFSOutputStream.java:967)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.endBlock(DFSOutputStream.java:705)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:894)
22/04/03 09:28:38 INFO db.DBInputFormat: Using read commited transaction isolation
22/04/03 09:28:38 INFO db.DataDrivenDBInputFormat: BoundingValsQuery: SELECT MIN(`customer_id`), MAX(`customer_id`) FROM `customers`
22/04/03 09:28:38 INFO db.IntegerSplitter: Split size: 3108; Num splits: 4 from: 1 to: 12435
22/04/03 09:28:38 WARN hdfs.DFSClient: Caught exception 
java.lang.InterruptedException
	at java.lang.Object.wait(Native Method)
	at java.lang.Thread.join(Thread.java:1281)
	at java.lang.Thread.join(Thread.java:1355)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.closeResponder(DFSOutputStream.java:967)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.endBlock(DFSOutputStream.java:705)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:894)
22/04/03 09:28:38 INFO mapreduce.JobSubmitter: number of splits:4
22/04/03 09:28:38 INFO mapreduce.JobSubmitter: Submitting tokens for job: job_1649003113144_0001
22/04/03 09:28:39 INFO impl.YarnClientImpl: Submitted application application_1649003113144_0001
22/04/03 09:28:39 INFO mapreduce.Job: The url to track the job: http://quickstart.cloudera:8088/proxy/application_1649003113144_0001/
22/04/03 09:28:39 INFO mapreduce.Job: Running job: job_1649003113144_0001
22/04/03 09:28:52 INFO mapreduce.Job: Job job_1649003113144_0001 running in uber mode : false
22/04/03 09:28:52 INFO mapreduce.Job:  map 0% reduce 0%
22/04/03 09:29:34 INFO mapreduce.Job:  map 25% reduce 0%
22/04/03 09:29:37 INFO mapreduce.Job:  map 50% reduce 0%
22/04/03 09:29:38 INFO mapreduce.Job:  map 75% reduce 0%
22/04/03 09:29:39 INFO mapreduce.Job:  map 100% reduce 0%
22/04/03 09:29:39 INFO mapreduce.Job: Job job_1649003113144_0001 completed successfully
22/04/03 09:29:39 INFO mapreduce.Job: Counters: 31
	File System Counters
		FILE: Number of bytes read=0
		FILE: Number of bytes written=685840
		FILE: Number of read operations=0
		FILE: Number of large read operations=0
		FILE: Number of write operations=0
		HDFS: Number of bytes read=487
		HDFS: Number of bytes written=953525
		HDFS: Number of read operations=16
		HDFS: Number of large read operations=0
		HDFS: Number of write operations=8
	Job Counters 
		Killed map tasks=1
		Launched map tasks=4
		Other local map tasks=4
		Total time spent by all maps in occupied slots (ms)=166452
		Total time spent by all reduces in occupied slots (ms)=0
		Total time spent by all map tasks (ms)=166452
		Total vcore-milliseconds taken by all map tasks=166452
		Total megabyte-milliseconds taken by all map tasks=170446848
	Map-Reduce Framework
		Map input records=12435
		Map output records=12435
		Input split bytes=487
		Spilled Records=0
		Failed Shuffles=0
		Merged Map outputs=0
		GC time elapsed (ms)=2792
		CPU time spent (ms)=7840
		Physical memory (bytes) snapshot=568446976
		Virtual memory (bytes) snapshot=6043832320
		Total committed heap usage (bytes)=243007488
	File Input Format Counters 
		Bytes Read=0
	File Output Format Counters 
		Bytes Written=953525
22/04/03 09:29:39 INFO mapreduce.ImportJobBase: Transferred 931.1768 KB in 63.8095 seconds (14.5931 KB/sec)
22/04/03 09:29:39 INFO mapreduce.ImportJobBase: Retrieved 12435 records.
[cloudera@quickstart ~]$

 Let’s query the directory ‘/overwrite_demo’.

[cloudera@quickstart ~]$ hadoop fs -ls /overwrite_demo
Found 5 items
-rw-r--r--   1 cloudera supergroup          0 2022-04-03 09:29 /overwrite_demo/_SUCCESS
-rw-r--r--   1 cloudera supergroup     237145 2022-04-03 09:29 /overwrite_demo/part-m-00000
-rw-r--r--   1 cloudera supergroup     237965 2022-04-03 09:29 /overwrite_demo/part-m-00001
-rw-r--r--   1 cloudera supergroup     238092 2022-04-03 09:29 /overwrite_demo/part-m-00002
-rw-r--r--   1 cloudera supergroup     240323 2022-04-03 09:29 /overwrite_demo/part-m-00003

 

When you retry to execute the command ‘sqoop import’, you will get an error ‘/overwrite_demo already exists’.

[cloudera@quickstart ~]$ sqoop import \
> --connect "jdbc:mysql://quickstart.cloudera:3306/retail_db" \
> --username "root" \
> --password "cloudera" \
> --table "customers" \
> --target-dir /overwrite_demo
Warning: /usr/lib/sqoop/../accumulo does not exist! Accumulo imports will fail.
Please set $ACCUMULO_HOME to the root of your Accumulo installation.
22/04/03 09:32:05 INFO sqoop.Sqoop: Running Sqoop version: 1.4.6-cdh5.13.0
22/04/03 09:32:05 WARN tool.BaseSqoopTool: Setting your password on the command-line is insecure. Consider using -P instead.
22/04/03 09:32:05 INFO manager.MySQLManager: Preparing to use a MySQL streaming resultset.
22/04/03 09:32:05 INFO tool.CodeGenTool: Beginning code generation
22/04/03 09:32:06 INFO manager.SqlManager: Executing SQL statement: SELECT t.* FROM `customers` AS t LIMIT 1
22/04/03 09:32:06 INFO manager.SqlManager: Executing SQL statement: SELECT t.* FROM `customers` AS t LIMIT 1
22/04/03 09:32:06 INFO orm.CompilationManager: HADOOP_MAPRED_HOME is /usr/lib/hadoop-mapreduce
Note: /tmp/sqoop-cloudera/compile/048abc47d272bcd935bbe79182ed355f/customers.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
22/04/03 09:32:08 INFO orm.CompilationManager: Writing jar file: /tmp/sqoop-cloudera/compile/048abc47d272bcd935bbe79182ed355f/customers.jar
22/04/03 09:32:08 WARN manager.MySQLManager: It looks like you are importing from mysql.
22/04/03 09:32:08 WARN manager.MySQLManager: This transfer can be faster! Use the --direct
22/04/03 09:32:08 WARN manager.MySQLManager: option to exercise a MySQL-specific fast path.
22/04/03 09:32:08 INFO manager.MySQLManager: Setting zero DATETIME behavior to convertToNull (mysql)
22/04/03 09:32:08 INFO mapreduce.ImportJobBase: Beginning import of customers
22/04/03 09:32:08 INFO Configuration.deprecation: mapred.job.tracker is deprecated. Instead, use mapreduce.jobtracker.address
22/04/03 09:32:08 INFO Configuration.deprecation: mapred.jar is deprecated. Instead, use mapreduce.job.jar
22/04/03 09:32:09 INFO Configuration.deprecation: mapred.map.tasks is deprecated. Instead, use mapreduce.job.maps
22/04/03 09:32:09 INFO client.RMProxy: Connecting to ResourceManager at /0.0.0.0:8032
22/04/03 09:32:10 WARN security.UserGroupInformation: PriviledgedActionException as:cloudera (auth:SIMPLE) cause:org.apache.hadoop.mapred.FileAlreadyExistsException: Output directory hdfs://quickstart.cloudera:8020/overwrite_demo already exists
22/04/03 09:32:10 ERROR tool.ImportTool: Import failed: org.apache.hadoop.mapred.FileAlreadyExistsException: Output directory hdfs://quickstart.cloudera:8020/overwrite_demo already exists
	at org.apache.hadoop.mapreduce.lib.output.FileOutputFormat.checkOutputSpecs(FileOutputFormat.java:146)
	at org.apache.hadoop.mapreduce.JobSubmitter.checkSpecs(JobSubmitter.java:270)
	at org.apache.hadoop.mapreduce.JobSubmitter.submitJobInternal(JobSubmitter.java:143)
	at org.apache.hadoop.mapreduce.Job$10.run(Job.java:1307)
	at org.apache.hadoop.mapreduce.Job$10.run(Job.java:1304)
	at java.security.AccessController.doPrivileged(Native Method)
	at javax.security.auth.Subject.doAs(Subject.java:415)
	at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1917)
	at org.apache.hadoop.mapreduce.Job.submit(Job.java:1304)
	at org.apache.hadoop.mapreduce.Job.waitForCompletion(Job.java:1325)
	at org.apache.sqoop.mapreduce.ImportJobBase.doSubmitJob(ImportJobBase.java:203)
	at org.apache.sqoop.mapreduce.ImportJobBase.runJob(ImportJobBase.java:176)
	at org.apache.sqoop.mapreduce.ImportJobBase.runImport(ImportJobBase.java:273)
	at org.apache.sqoop.manager.SqlManager.importTable(SqlManager.java:692)
	at org.apache.sqoop.manager.MySQLManager.importTable(MySQLManager.java:127)
	at org.apache.sqoop.tool.ImportTool.importTable(ImportTool.java:513)
	at org.apache.sqoop.tool.ImportTool.run(ImportTool.java:621)
	at org.apache.sqoop.Sqoop.run(Sqoop.java:147)
	at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
	at org.apache.sqoop.Sqoop.runSqoop(Sqoop.java:183)
	at org.apache.sqoop.Sqoop.runTool(Sqoop.java:234)
	at org.apache.sqoop.Sqoop.runTool(Sqoop.java:243)
	at org.apache.sqoop.Sqoop.main(Sqoop.java:252)

[cloudera@quickstart ~]$

 

How to resolve above error?

There are two options.

a.   Change the target directory to some non-exist folder

b.   Override the content of target directory using --delete-target-dir option.

 

Let’s override the content of target directory.


 

sqoop import \
--connect "jdbc:mysql://quickstart.cloudera:3306/retail_db" \
--username "root" \
--password "cloudera" \
--table "customers" \
--target-dir /overwrite_demo \
--delete-target-dir

[cloudera@quickstart ~]$ sqoop import \
> --connect "jdbc:mysql://quickstart.cloudera:3306/retail_db" \
> --username "root" \
> --password "cloudera" \
> --table "customers" \
> --target-dir /overwrite_demo \
> --delete-target-dir
Warning: /usr/lib/sqoop/../accumulo does not exist! Accumulo imports will fail.
Please set $ACCUMULO_HOME to the root of your Accumulo installation.
22/04/03 09:34:32 INFO sqoop.Sqoop: Running Sqoop version: 1.4.6-cdh5.13.0
22/04/03 09:34:32 WARN tool.BaseSqoopTool: Setting your password on the command-line is insecure. Consider using -P instead.
22/04/03 09:34:33 INFO manager.MySQLManager: Preparing to use a MySQL streaming resultset.
22/04/03 09:34:33 INFO tool.CodeGenTool: Beginning code generation
22/04/03 09:34:33 INFO manager.SqlManager: Executing SQL statement: SELECT t.* FROM `customers` AS t LIMIT 1
22/04/03 09:34:33 INFO manager.SqlManager: Executing SQL statement: SELECT t.* FROM `customers` AS t LIMIT 1
22/04/03 09:34:33 INFO orm.CompilationManager: HADOOP_MAPRED_HOME is /usr/lib/hadoop-mapreduce
Note: /tmp/sqoop-cloudera/compile/6dfc74dc41da166c48e61c9aa97cbb00/customers.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
22/04/03 09:34:36 INFO orm.CompilationManager: Writing jar file: /tmp/sqoop-cloudera/compile/6dfc74dc41da166c48e61c9aa97cbb00/customers.jar
22/04/03 09:34:37 INFO tool.ImportTool: Destination directory /overwrite_demo deleted.
22/04/03 09:34:37 WARN manager.MySQLManager: It looks like you are importing from mysql.
22/04/03 09:34:37 WARN manager.MySQLManager: This transfer can be faster! Use the --direct
22/04/03 09:34:37 WARN manager.MySQLManager: option to exercise a MySQL-specific fast path.
22/04/03 09:34:37 INFO manager.MySQLManager: Setting zero DATETIME behavior to convertToNull (mysql)
22/04/03 09:34:37 INFO mapreduce.ImportJobBase: Beginning import of customers
22/04/03 09:34:37 INFO Configuration.deprecation: mapred.job.tracker is deprecated. Instead, use mapreduce.jobtracker.address
22/04/03 09:34:37 INFO Configuration.deprecation: mapred.jar is deprecated. Instead, use mapreduce.job.jar
22/04/03 09:34:37 INFO Configuration.deprecation: mapred.map.tasks is deprecated. Instead, use mapreduce.job.maps
22/04/03 09:34:37 INFO client.RMProxy: Connecting to ResourceManager at /0.0.0.0:8032
22/04/03 09:34:38 WARN hdfs.DFSClient: Caught exception 
java.lang.InterruptedException
	at java.lang.Object.wait(Native Method)
	at java.lang.Thread.join(Thread.java:1281)
	at java.lang.Thread.join(Thread.java:1355)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.closeResponder(DFSOutputStream.java:967)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.endBlock(DFSOutputStream.java:705)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:894)
22/04/03 09:34:38 WARN hdfs.DFSClient: Caught exception 
java.lang.InterruptedException
	at java.lang.Object.wait(Native Method)
	at java.lang.Thread.join(Thread.java:1281)
	at java.lang.Thread.join(Thread.java:1355)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.closeResponder(DFSOutputStream.java:967)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.endBlock(DFSOutputStream.java:705)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:894)
22/04/03 09:34:38 WARN hdfs.DFSClient: Caught exception 
java.lang.InterruptedException
	at java.lang.Object.wait(Native Method)
	at java.lang.Thread.join(Thread.java:1281)
	at java.lang.Thread.join(Thread.java:1355)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.closeResponder(DFSOutputStream.java:967)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.endBlock(DFSOutputStream.java:705)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:894)
22/04/03 09:34:38 WARN hdfs.DFSClient: Caught exception 
java.lang.InterruptedException
	at java.lang.Object.wait(Native Method)
	at java.lang.Thread.join(Thread.java:1281)
	at java.lang.Thread.join(Thread.java:1355)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.closeResponder(DFSOutputStream.java:967)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.endBlock(DFSOutputStream.java:705)
	at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:894)
22/04/03 09:34:39 INFO mapreduce.JobSubmitter: number of splits:4
22/04/03 09:34:39 INFO mapreduce.JobSubmitter: Submitting tokens for job: job_1649003113144_0002
22/04/03 09:34:39 INFO impl.YarnClientImpl: Submitted application application_1649003113144_0002
22/04/03 09:34:39 INFO mapreduce.Job: The url to track the job: http://quickstart.cloudera:8088/proxy/application_1649003113144_0002/
22/04/03 09:34:39 INFO mapreduce.Job: Running job: job_1649003113144_0002
22/04/03 09:34:48 INFO mapreduce.Job: Job job_1649003113144_0002 running in uber mode : false
22/04/03 09:34:48 INFO mapreduce.Job:  map 0% reduce 0%
22/04/03 09:35:03 INFO mapreduce.Job:  map 25% reduce 0%
22/04/03 09:35:07 INFO mapreduce.Job:  map 50% reduce 0%
22/04/03 09:35:08 INFO mapreduce.Job:  map 100% reduce 0%
22/04/03 09:35:09 INFO mapreduce.Job: Job job_1649003113144_0002 completed successfully
22/04/03 09:35:09 INFO mapreduce.Job: Counters: 30
	File System Counters
		FILE: Number of bytes read=0
		FILE: Number of bytes written=685836
		FILE: Number of read operations=0
		FILE: Number of large read operations=0
		FILE: Number of write operations=0
		HDFS: Number of bytes read=487
		HDFS: Number of bytes written=953525
		HDFS: Number of read operations=16
		HDFS: Number of large read operations=0
		HDFS: Number of write operations=8
	Job Counters 
		Launched map tasks=4
		Other local map tasks=4
		Total time spent by all maps in occupied slots (ms)=63022
		Total time spent by all reduces in occupied slots (ms)=0
		Total time spent by all map tasks (ms)=63022
		Total vcore-milliseconds taken by all map tasks=63022
		Total megabyte-milliseconds taken by all map tasks=64534528
	Map-Reduce Framework
		Map input records=12435
		Map output records=12435
		Input split bytes=487
		Spilled Records=0
		Failed Shuffles=0
		Merged Map outputs=0
		GC time elapsed (ms)=746
		CPU time spent (ms)=4730
		Physical memory (bytes) snapshot=556478464
		Virtual memory (bytes) snapshot=6044942336
		Total committed heap usage (bytes)=243007488
	File Input Format Counters 
		Bytes Read=0
	File Output Format Counters 
		Bytes Written=953525
22/04/03 09:35:09 INFO mapreduce.ImportJobBase: Transferred 931.1768 KB in 32.1808 seconds (28.9358 KB/sec)
22/04/03 09:35:09 INFO mapreduce.ImportJobBase: Retrieved 12435 records.
[cloudera@quickstart ~]$

Let’s query the content of /overwrite_demo folder.

[cloudera@quickstart ~]$ hadoop fs -ls /overwrite_demo
Found 5 items
-rw-r--r--   1 cloudera supergroup          0 2022-04-03 09:35 /overwrite_demo/_SUCCESS
-rw-r--r--   1 cloudera supergroup     237145 2022-04-03 09:35 /overwrite_demo/part-m-00000
-rw-r--r--   1 cloudera supergroup     237965 2022-04-03 09:35 /overwrite_demo/part-m-00001
-rw-r--r--   1 cloudera supergroup     238092 2022-04-03 09:35 /overwrite_demo/part-m-00002
-rw-r--r--   1 cloudera supergroup     240323 2022-04-03 09:35 /overwrite_demo/part-m-00003
[cloudera@quickstart ~]$

 

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